Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tyrosine transporter tyrp | IW01_03910 | Not Available | Negative | 862545 - 863753 | 42869.2 |
| hypothetical protein | IW01_03915 | Not Available | Positive | 863974 - 865167 | 43257.2 |
| hypothetical protein | IW01_03920 | Not Available | Negative | 865602 - 866462 | 32277.8 |
| oxidoreductase | IW01_03925 | Not Available | Negative | 866573 - 867343 | 27829.8 |
| acyl-coa thioesterase | IW01_03930 | Not Available | Negative | 867372 - 867965 | 22002.8 |
| abc transporter atp-binding protein | IW01_03935 | Not Available | Positive | 868038 - 868709 | 24207.1 |
| sugar abc transporter permease | IW01_03940 | Not Available | Positive | 868706 - 871135 | 90166.7 |
| iron abc transporter atp-binding protein | IW01_03945 | Not Available | Negative | 871272 - 872072 | 29039.6 |
| iron-siderophore abc transporter permease | IW01_03950 | Not Available | Negative | 872069 - 873151 | 38198.1 |
| abc transporter substrate-binding protein | IW01_03955 | Not Available | Negative | 873158 - 874276 | 41266.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
