Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Phage virion morphogenesis protein | IW01_09485 | Not Available | Positive | 2070194 - 2070643 | 16679.2 |
| Gp7, panl12 | IW01_09490 | Not Available | Negative | 2070682 - 2070999 | 11743.9 |
| Gp6, panl56 | IW01_09495 | Not Available | Negative | 2070962 - 2071237 | 10768.7 |
| Antirepressor protein | IW01_09500 | Not Available | Positive | 2071809 - 2072147 | 13222.6 |
| Repressor protein ci | IW01_10825 | Not Available | Negative | 2370596 - 2371453 | 30764.6 |
| Hypothetical protein | IW01_10830 | Not Available | Positive | 2371569 - 2371904 | 12295.9 |
| Regulatory protein cii | IW01_10835 | Not Available | Positive | 2371943 - 2372452 | 18228.9 |
| hypothetical protein | IW01_10840 | Not Available | Positive | 2372468 - 2373061 | 22240.4 |
| hypothetical protein | IW01_10845 | Not Available | Negative | 2373159 - 2373434 | 10269.2 |
| Replication gene b protein | IW01_10855 | Not Available | Positive | 2373727 - 2374227 | 19615.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
