Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IW01_03650 | Not Available | Positive | 798109 - 798690 | 20417.7 |
| methyltransferase | IW01_03655 | Not Available | Negative | 798710 - 799030 | 12030.5 |
| gene expression modulator | IW01_03660 | Not Available | Negative | 799768 - 799971 | 8145.97 |
| hypothetical protein | IW01_03665 | Not Available | Negative | 800025 - 800393 | 14020.5 |
| 50s ribosomal protein l31 | IW01_03670 | Not Available | Negative | 801152 - 801400 | 9387.83 |
| multidrug transporter | IW01_03675 | Not Available | Negative | 801630 - 804758 | 112322.0 |
| multidrug transporter | IW01_03680 | Not Available | Negative | 804787 - 805980 | 42135.1 |
| transcriptional regulator | IW01_03685 | Not Available | Positive | 806146 - 806787 | 24704.8 |
| prephenate dehydrogenase | IW01_03695 | Not Available | Negative | 807052 - 807588 | 20930.0 |
| hypothetical protein | IW01_03700 | Not Available | Positive | 807802 - 808197 | 15190.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
