Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IW01_03235 | Not Available | Positive | 701596 - 702414 | 30999.9 |
| alcohol dehydrogenase | IW01_03245 | Not Available | Negative | 703659 - 704678 | 36222.6 |
| hypothetical protein | IW01_03250 | Not Available | Positive | 705282 - 706235 | 36565.2 |
| hydroxyethylthiazole kinase | IW01_03255 | Not Available | Positive | 706578 - 707372 | 27175.3 |
| hydroxymethylpyrimidine kinase | IW01_03260 | Not Available | Positive | 707369 - 708172 | 28893.6 |
| phosphate-starvation-inducible protein psie | IW01_03265 | Not Available | Positive | 708505 - 708912 | 15259.2 |
| lipid kinase | IW01_03270 | Not Available | Negative | 708941 - 709840 | 32499.9 |
| protease | IW01_03275 | Not Available | Negative | 710293 - 711654 | 51321.2 |
| hypothetical protein | IW01_03280 | Not Available | Negative | 711849 - 712808 | 36546.0 |
| gcn5 family acetyltransferase | IW01_03285 | Not Available | Negative | 712978 - 713529 | 20481.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
