Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Terminase atpase subunit | IW01_09435 | Not Available | Negative | 2063126 - 2064895 | 66853.5 |
| Capsid scaffold | IW01_09440 | Not Available | Positive | 2065035 - 2065889 | 31074.5 |
| Capsid protein | IW01_09445 | Not Available | Positive | 2065939 - 2067054 | 41730.4 |
| Terminase endonuclease subunit | IW01_09450 | Not Available | Positive | 2067057 - 2067716 | 24227.5 |
| Phage head protein | IW01_09455 | Not Available | Positive | 2067808 - 2068311 | 18843.3 |
| Tail protein | IW01_09460 | Not Available | Positive | 2068311 - 2068514 | 6967.24 |
| Holin | IW01_09465 | Not Available | Positive | 2068505 - 2068726 | 8443.27 |
| Prophage lysozyme | IW01_09470 | Not Available | Positive | 2068710 - 2069219 | 18271.3 |
| Hypothetical protein | IW01_09475 | Not Available | Positive | 2069216 - 2069656 | 16715.1 |
| Tail completion protein | IW01_09480 | Not Available | Positive | 2069746 - 2070201 | 16744.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
