Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipid a biosynthesis palmitoleoyl acyltransferase | IW01_02980 | Not Available | Positive | 632159 - 633082 | 35159.1 |
| hypothetical protein | IW01_02985 | Not Available | Negative | 633334 - 633750 | 15920.8 |
| permase | IW01_02995 | Not Available | Positive | 633966 - 635321 | 46285.3 |
| hypothetical protein | IW01_03000 | Not Available | Negative | 635377 - 635589 | 8211.16 |
| sodium:proton antiporter | IW01_03005 | Not Available | Positive | 635588 - 637234 | 60377.7 |
| xre family transcriptional regulator | IW01_03010 | Not Available | Positive | 637591 - 638301 | 26988.2 |
| atpase | IW01_03015 | Not Available | Positive | 638279 - 639778 | 56633.0 |
| pilin | IW01_03020 | Not Available | Positive | 640093 - 640314 | 7427.98 |
| peptidase a24 | IW01_03025 | Not Available | Positive | 640322 - 640873 | 19542.9 |
| pilus assembly protein cpab | IW01_03030 | Not Available | Positive | 640920 - 641870 | 33540.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
