Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IW01_02675 | Not Available | Negative | 572682 - 573062 | 13807.5 |
| purine nucleoside phosphoramidase | IW01_02680 | Not Available | Negative | 573132 - 573482 | 12812.6 |
| mfs transporter | IW01_02685 | Not Available | Negative | 573711 - 575165 | 50792.9 |
| hypothetical protein | IW01_02690 | Not Available | Positive | 575192 - 575431 | 9429.96 |
| hypothetical protein | IW01_02695 | Not Available | Negative | 575706 - 576713 | 36855.1 |
| protease | IW01_02700 | Not Available | Negative | 576885 - 577763 | 33131.5 |
| protease | IW01_02705 | Not Available | Negative | 577775 - 578770 | 37354.5 |
| scp-2 sterol transfer family protein | IW01_02710 | Not Available | Positive | 579127 - 579651 | 19706.0 |
| acetyltransferase | IW01_02715 | Not Available | Positive | 579645 - 580187 | 19712.0 |
| giy-yig nuclease | IW01_02720 | Not Available | Negative | 580212 - 580511 | 11265.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
