Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Baseplate j/gp47 family protein | IW01_05735 | Not Available | Positive | 1252426 - 1253610 | 43428.5 |
| Tail protein | IW01_05740 | Not Available | Positive | 1253603 - 1254235 | 24212.5 |
| Tail protein | IW01_05745 | Not Available | Positive | 1254242 - 1255948 | 60279.8 |
| Tail fiber assembly protein | IW01_05750 | Not Available | Positive | 1255948 - 1256562 | 22528.2 |
| Hypothetical protein | IW01_05755 | Not Available | Positive | 1256562 - 1257263 | 24530.0 |
| Hypothetical protein | IW01_05760 | Not Available | Positive | 1257260 - 1257811 | 19559.3 |
| Hypothetical protein | IW01_05765 | Not Available | Positive | 1257808 - 1259478 | 60240.5 |
| Attr | Not Available | Not Available | Positive | 1261602 - 1261653 | Not Available |
| Hicb protein | IW01_09425 | Not Available | Positive | 2061737 - 2062078 | 12348.5 |
| Phage portal protein | IW01_09430 | Not Available | Negative | 2062110 - 2063129 | 38445.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
