Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase | IW01_02575 | Not Available | Negative | 552615 - 553646 | 38505.4 |
| hypothetical protein | IW01_02580 | Not Available | Negative | 553677 - 554654 | 37358.7 |
| hypothetical protein | IW01_02585 | Not Available | Positive | 555109 - 555354 | 9348.75 |
| hypothetical protein | IW01_02590 | Not Available | Negative | 555482 - 555817 | 12379.4 |
| hypothetical protein | IW01_02595 | Not Available | Positive | 556429 - 556716 | 10967.5 |
| hypothetical protein | IW01_02600 | Not Available | Negative | 556810 - 557034 | 8122.82 |
| response regulator | IW01_02605 | Not Available | Positive | 557677 - 558333 | 23991.4 |
| excinuclease abc subunit c | IW01_02610 | Not Available | Positive | 558326 - 560158 | 67971.8 |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | IW01_02615 | Not Available | Positive | 560217 - 560765 | 20830.0 |
| Trna-gly | Not Available | Not Available | Positive | 560905 - 560980 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
