Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | IW01_02475 | Not Available | Positive | 531222 - 532994 | 65305.1 |
| luxr family transcriptional regulator | IW01_02480 | Not Available | Negative | 533009 - 533746 | 28375.5 |
| hypothetical protein | IW01_02485 | Not Available | Negative | 534215 - 534448 | 9158.31 |
| hypothetical protein | IW01_02490 | Not Available | Positive | 534765 - 535691 | 33866.0 |
| hypothetical protein | IW01_02495 | Not Available | Positive | 536406 - 536660 | 9050.76 |
| chemotaxis protein chev | IW01_02500 | Not Available | Positive | 537266 - 538231 | 35454.7 |
| outer membrane receptor protein | IW01_02505 | Not Available | Negative | 538391 - 540580 | 79664.0 |
| tetr family transcriptional regulator | IW01_02510 | Not Available | Negative | 540763 - 542049 | 47423.5 |
| mfs transporter | IW01_02515 | Not Available | Positive | 542143 - 543399 | 44560.4 |
| s-transferase | IW01_02520 | Not Available | Negative | 543446 - 544285 | 30999.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
