Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| structural protein mipa | IW01_02300 | Not Available | Positive | 488543 - 489379 | 29846.1 |
| peptidase | IW01_02310 | Not Available | Negative | 490073 - 491428 | 50803.7 |
| hemolysin d | IW01_02315 | Not Available | Negative | 491431 - 492789 | 49475.3 |
| peptidase | IW01_02320 | Not Available | Negative | 492854 - 494701 | 66145.1 |
| hemophore hasa | IW01_02325 | Not Available | Negative | 495030 - 495647 | 21158.2 |
| tonb-dependent receptor | IW01_02330 | Not Available | Negative | 495765 - 498443 | 98071.1 |
| iron dicitrate transport regulator fecr | IW01_02335 | Not Available | Negative | 498703 - 499656 | 35233.0 |
| putrescine--2-oxoglutarate aminotransferase | IW01_02355 | Not Available | Positive | 501327 - 502733 | 50914.5 |
| sam-dependent methlyltransferase | IW01_02360 | Not Available | Negative | 502835 - 503821 | 36181.3 |
| arac family transcriptional regulator | IW01_02365 | Not Available | Positive | 503873 - 504880 | 38092.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
