Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | IW01_02250 | Not Available | Positive | 476458 - 476955 | 17838.3 |
| membrane protein | IW01_02255 | Not Available | Negative | 476987 - 477964 | 35823.9 |
| arac family transcriptional regulator | IW01_02260 | Not Available | Negative | 478060 - 478893 | 31905.4 |
| transcriptional regulator cbl | IW01_02265 | Not Available | Positive | 479450 - 480403 | 35733.8 |
| glutamate:protein symporter | IW01_02270 | Not Available | Positive | 480899 - 482215 | 47285.3 |
| glycerol dehydrogenase | IW01_02275 | Not Available | Negative | 482292 - 483395 | 39715.5 |
| c4-dicarboxylate transporter | IW01_02280 | Not Available | Negative | 483629 - 484969 | 47919.2 |
| hypothetical protein | IW01_02285 | Not Available | Negative | 485785 - 486222 | 16134.2 |
| membrane protein | IW01_02290 | Not Available | Negative | 486273 - 487661 | 52334.7 |
| transcriptional regulator | IW01_02295 | Not Available | Negative | 487661 - 488338 | 25003.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
