Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Putative tail completion protein | IW01_05680 | Not Available | Positive | 1246007 - 1246738 | 27175.1 |
| Putative tail sheath protein | IW01_05685 | Not Available | Positive | 1246739 - 1247878 | 41216.2 |
| Putative tail tube protein | IW01_05690 | Not Available | Positive | 1247881 - 1248336 | 16205.2 |
| Holin | IW01_05695 | Not Available | Positive | 1248340 - 1248627 | 9867.27 |
| M15 family peptidase | IW01_05700 | Not Available | Positive | 1248624 - 1248965 | 12304.4 |
| Hypothetical protein | IW01_05705 | Not Available | Positive | 1248965 - 1249339 | 13493.8 |
| Hypothetical protein | IW01_05710 | Not Available | Positive | 1249278 - 1249457 | 6852.15 |
| Hypothetical protein | IW01_05715 | Not Available | Positive | 1249454 - 1249726 | 9894.84 |
| Tail tape measure protein | IW01_05725 | Not Available | Positive | 1249923 - 1252103 | 77167.2 |
| Hypothetical protein | IW01_05730 | Not Available | Positive | 1252100 - 1252429 | 12205.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
