Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| relaxase | IW01_01935 | Not Available | Negative | 407509 - 408792 | 47811.5 |
| hypothetical protein | IW01_01940 | Not Available | Negative | 408761 - 409198 | 16421.6 |
| hypothetical protein | IW01_01945 | Not Available | Negative | 409385 - 409927 | 21290.8 |
| hypothetical protein | IW01_01950 | Not Available | Negative | 410358 - 411857 | 58373.6 |
| hypothetical protein | IW01_01955 | Not Available | Positive | 412050 - 412526 | 17832.1 |
| gtp-binding protein | IW01_01960 | Not Available | Negative | 412581 - 414401 | 70176.0 |
| hypothetical protein | IW01_01965 | Not Available | Negative | 414401 - 414847 | 16722.8 |
| hypothetical protein | IW01_01970 | Not Available | Negative | 414844 - 416043 | 46452.9 |
| hypothetical protein | IW01_01975 | Not Available | Negative | 416254 - 416589 | 12520.0 |
| hypothetical protein | IW01_01980 | Not Available | Negative | 416882 - 417061 | 7141.47 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
