Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IW01_01600 | Not Available | Positive | 339495 - 340340 | 32292.2 |
| flagellar biosynthesis sigma factor | IW01_01605 | Not Available | Positive | 340719 - 341441 | 27462.6 |
| flagella biosynthesis protein fliz | IW01_01610 | Not Available | Positive | 341645 - 342160 | 20629.7 |
| hypothetical protein | IW01_01615 | Not Available | Positive | 342686 - 343474 | 29331.5 |
| transposase | IW01_01625 | Not Available | Positive | 344929 - 345228 | 11591.0 |
| transposase | IW01_01635 | Not Available | Negative | 346333 - 346599 | 10295.5 |
| cell envelope biogenesis protein ompa | IW01_01640 | Not Available | Positive | 347055 - 347933 | 31207.4 |
| hypothetical protein | IW01_01645 | Not Available | Negative | 348322 - 348510 | 6439.78 |
| exopolyphosphatase | IW01_01650 | Not Available | Negative | 348865 - 350400 | 58223.4 |
| polyphosphate kinase | IW01_01655 | Not Available | Negative | 350400 - 352472 | 80208.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
