Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glucose-6-phosphate dehydrogenase | IW01_01185 | Not Available | Positive | 250174 - 251649 | 56032.9 |
| keto-deoxy-phosphogluconate aldolase | IW01_01190 | Not Available | Positive | 251821 - 252462 | 22267.2 |
| phosphoribosylglycinamide formyltransferase | IW01_01195 | Not Available | Negative | 252638 - 253816 | 42347.9 |
| protease 2 | IW01_01200 | Not Available | Positive | 254017 - 256068 | 79181.7 |
| dna-binding protein | IW01_01205 | Not Available | Negative | 256321 - 256671 | 13391.1 |
| repressor | IW01_01210 | Not Available | Negative | 257161 - 257895 | 26794.8 |
| Trna-asn | Not Available | Not Available | Positive | 259882 - 259957 | Not Available |
| galactoside permease | IW01_01225 | Not Available | Negative | 260100 - 261362 | 47237.8 |
| beta-d-galactosidase | IW01_01230 | Not Available | Negative | 261498 - 264629 | 119764.0 |
| laci family transcriptional regulator | IW01_01235 | Not Available | Negative | 264940 - 266016 | 38938.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
