Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Attl | Not Available | Not Available | Positive | 1229782 - 1229833 | Not Available |
| Integrase | IW01_05575 | Not Available | Negative | 1229945 - 1230949 | 38019.6 |
| hypothetical protein | IW01_05580 | Not Available | Negative | 1231067 - 1231993 | 35647.6 |
| hypothetical protein | IW01_05585 | Not Available | Negative | 1231996 - 1232415 | 15919.6 |
| Repressor protein ci | IW01_05595 | Not Available | Negative | 1232856 - 1233428 | 21039.4 |
| Hypothetical protein | IW01_05600 | Not Available | Positive | 1233547 - 1233792 | 8932.96 |
| Regulatory protein cii | IW01_05605 | Not Available | Positive | 1233826 - 1234329 | 17900.5 |
| hypothetical protein | IW01_05610 | Not Available | Positive | 1234341 - 1234544 | 7611.36 |
| hypothetical protein | IW01_05615 | Not Available | Positive | 1234547 - 1234891 | 13363.8 |
| Hypothetical protein | IW01_05620 | Not Available | Positive | 1234966 - 1235202 | 9101.94 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
