Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | IW01_00825 | Not Available | Negative | 177822 - 178331 | 18685.1 |
| hypothetical protein | IW01_00830 | Not Available | Negative | 178683 - 179021 | 12201.4 |
| glycosyl transferase | IW01_00840 | Not Available | Positive | 179729 - 180697 | 35117.5 |
| peptidase m3 | IW01_00845 | Not Available | Positive | 180784 - 182652 | 70838.9 |
| glutamine abc transporter atp-binding protein | IW01_00850 | Not Available | Negative | 182704 - 183426 | 26519.2 |
| glutamine abc transporter permease | IW01_00855 | Not Available | Negative | 183423 - 184082 | 24085.5 |
| glutamine abc transporter substrate-bindnig protein | IW01_00860 | Not Available | Negative | 184109 - 184855 | 27238.7 |
| dna starvation/stationary phase protection protein dps | IW01_00865 | Not Available | Negative | 185247 - 185750 | 18492.1 |
| threonine transporter | IW01_00875 | Not Available | Negative | 186650 - 187537 | 31145.2 |
| membrane protein | IW01_00880 | Not Available | Positive | 187914 - 188429 | 18312.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
