Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dl-methionine transporter permease subunit | IW01_00340 | Not Available | Negative | 73447 - 74100 | 23190.6 |
| dl-methionine transporter atp-binding subunit | IW01_00345 | Not Available | Negative | 74093 - 75124 | 37642.6 |
| d,d-heptose 1,7-bisphosphate phosphatase | IW01_00350 | Not Available | Positive | 75305 - 75868 | 20641.6 |
| abc transporter atp-binding protein | IW01_00360 | Not Available | Positive | 76594 - 78186 | 59744.4 |
| coproporphyrinogen iii oxidase | IW01_00365 | Not Available | Positive | 78601 - 79914 | 49393.0 |
| shux | IW01_00370 | Not Available | Positive | 79929 - 80423 | 18076.5 |
| hypothetical protein | IW01_00375 | Not Available | Positive | 80420 - 81049 | 22278.9 |
| membrane protein | IW01_00380 | Not Available | Positive | 81210 - 81686 | 18725.7 |
| glutamine amidotransferase | IW01_00385 | Not Available | Positive | 81935 - 82657 | 26482.5 |
| gntr family transcriptional regulator | IW01_00390 | Not Available | Positive | 82779 - 84230 | 53798.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
