Pectobacterium brasiliense str. CFIA1033

Motile

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Pectobacterium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusPectobacterium
SpeciesPectobacterium brasiliense
StrainCFIA1033

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pectobacterium brasiliense strain CFIA1033 scaffold79, whole

Gene Summary

Adenine Count

1139914 bp

Thymine Count

1153128 bp

Guanine Count

1220949 bp

Cytosine Count

1190224 bp

Genome Length

4706268 bp

Protein-coding Genes

3861 genes

Non-Coding Genes

167 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
2-c-methyl-d-erythritol 4-phosphate cytidylyltransferaseIW01_00285Not AvailablePositive63563 - 6427625852.8
2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthaseIW01_00290Not AvailablePositive64330 - 6482717622.3
trna pseudouridine synthase dIW01_00295Not AvailablePositive64918 - 6596439230.5
protein-l-isoaspartate o-methyltransferaseIW01_00305Not AvailablePositive66104 - 6673023186.2
peptidaseIW01_00310Not AvailablePositive67287 - 6830935235.2
rna polymerase sigma factor rposIW01_00315Not AvailablePositive68363 - 6935538204.2
proline--trna ligaseIW01_00320Not AvailableNegative69461 - 7117963806.5
hypothetical proteinIW01_00325Not AvailableNegative71325 - 7204126604.0
membrane proteinIW01_00330Not AvailableNegative72038 - 7244814291.5
dl-methionine transporter substrate-binding subunitIW01_00335Not AvailableNegative72567 - 7338229468.4

Displaying genes 161 – 170 of 4028 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

103 records
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Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000950L-xyluloseC5H10O5Chemical structure of L-xylulose527-50-4
Average150.1299Da
Monoisotopic150.05282343Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001691hydrogenselenideHSeChemical structure of hydrogenselenideNot available
Average79.98Da
Monoisotopic80.924896Da

Displaying 1–10 of 103 metabolites

Health Effects

Health ConditionRelationReference
Soft and black rotCausesPMC11676143
BlacklegCausesPMC11676143
Aerial stem rotCausesPMC11676143
Tuber soft rotCausesPMC11676143
Soft rotCausesPMC13097337
BlacklegCausesPMC7824751
Soft rotCausesPMC7824751
Soft rot of cucumberCausesPMC7824751
Soft-rotCausesPMC8270676
Bacterial soft rotCausesPMC10673545

Displaying health effects 1 – 10 of 10 in total