Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| multidrug transporter | IW01_00145 | Not Available | Negative | 31141 - 32334 | 42810.1 |
| hypothetical protein | IW01_00150 | Not Available | Negative | 32315 - 32671 | 13334.1 |
| avirulence protein | IW01_00155 | Not Available | Negative | 32916 - 34781 | 68431.4 |
| allantoin permease | IW01_00160 | Not Available | Negative | 35089 - 36405 | 46595.4 |
| luxr family transcriptional regulator | IW01_00165 | Not Available | Negative | 36420 - 37109 | 26755.2 |
| acetyltransferase | IW01_00170 | Not Available | Negative | 37139 - 37552 | 16025.9 |
| lysr family transcriptional regulator | IW01_00175 | Not Available | Positive | 38027 - 38920 | 32667.5 |
| transporter | IW01_00180 | Not Available | Positive | 39067 - 39993 | 31575.0 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 39101 - 39216 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 39353 - 39457 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
