Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| asnc family transcriptional regulator | IW01_00045 | Not Available | Positive | 8097 - 8552 | 16354.3 |
| alpha-ketoglutarate-dependent dioxygenase | IW01_00050 | Not Available | Positive | 8689 - 9345 | 23876.6 |
| fumarate reductase | IW01_00055 | Not Available | Negative | 9429 - 10958 | 54985.0 |
| fumarate reductase | IW01_00060 | Not Available | Negative | 11028 - 11375 | 11781.9 |
| multidrug transporter | IW01_00065 | Not Available | Negative | 11441 - 12817 | 50366.9 |
| nitrite reductase | IW01_00070 | Not Available | Negative | 12818 - 13780 | 35252.6 |
| 4fe-4s ferredoxin | IW01_00075 | Not Available | Negative | 13773 - 14471 | 25423.0 |
| esterase | IW01_00080 | Not Available | Negative | 14969 - 15943 | 35010.6 |
| lysr family transcriptional regulator | IW01_00085 | Not Available | Positive | 16221 - 17123 | 34275.4 |
| bifunctional d-altronate/d-mannonate dehydratase | IW01_00090 | Not Available | Positive | 17415 - 18629 | 45748.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
