Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | CFIA1033 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1139914 bp
Thymine Count
1153128 bp
Guanine Count
1220949 bp
Cytosine Count
1190224 bp
Genome Length
4706268 bp
Protein-coding Genes
3861 genes
Non-Coding Genes
167 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aminodeoxychorismate synthase | IW01_04810 | Not Available | Positive | 1054673 - 1056115 | 53407.4 |
| nudix hydrolase | IW01_04815 | Not Available | Positive | 1056112 - 1056705 | 22232.8 |
| serine dehydratase | IW01_04820 | Not Available | Positive | 1057101 - 1058465 | 48897.9 |
| membrane protein | IW01_04825 | Not Available | Negative | 1058574 - 1060130 | 57254.3 |
| pts mannose transporter subunit iiab | IW01_04830 | Not Available | Positive | 1060704 - 1061672 | 35100.3 |
| pts mannose transporter subunit iic | IW01_04835 | Not Available | Positive | 1061850 - 1062647 | 27426.4 |
| pts mannose transporter subunit iid | IW01_04840 | Not Available | Positive | 1062662 - 1063504 | 30808.3 |
| hypothetical protein | IW01_04845 | Not Available | Positive | 1063566 - 1064024 | 17634.4 |
| hypothetical protein | IW01_04850 | Not Available | Positive | 1064449 - 1065021 | 20269.7 |
| 23s rrna methyltransferase | IW01_04855 | Not Available | Negative | 1065089 - 1065919 | 30706.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
