Sphingomonas yabuuchiae str. NS355

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas yabuuchiae strain NS355 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0 °C. This organism belongs to the genus Sphingomonas, which is characterized by its diverse metabolic capabilities and adaptation to various environments. The Gram-negative nature of S. yabuuchiae suggests a complex cell wall structure, typically associated with an outer membrane containing lipopolysaccharides, which may influence its interactions with the surrounding environment and other microorganisms. The rod shape of S. yabuuchiae enables efficient nutrient uptake and mobility, which may contribute to its ecological versatility. Given its aerobic requirement, this strain likely participates in processes that involve the degradation of organic compounds in oxygen-rich environments. The optimal growth temperature of 29.0 °C suggests that S. yabuuchiae is well-suited for environments that are moderately warm, potentially including soil and aquatic systems where organic matter is abundant. Moreover, the metabolic pathways utilized by Sphingomonas species are often linked to bioremediation processes, particularly in the breakdown of complex pollutants. This trait underscores the potential ecological role of S. yabuuchiae in contributing to environmental health by participating in carbon cycling and the detoxification of contaminated environments, highlighting its importance in microbial ecology and biotechnology applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas yabuuchiae
StrainNS355

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas yabuuchiae str. NS355
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas yabuuchiae strain NS355 contig_190, whole genome

Gene Summary

Adenine Count

663589 bp

Thymine Count

666134 bp

Guanine Count

1290823 bp

Cytosine Count

1288618 bp

Genome Length

3909164 bp

Protein-coding Genes

3411 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
homogentisate 1,2-dioxygenaseNS355_02890Not AvailableNegative617597 - 61864738842.1
dna-directed rna polymerase subunit betaNS355_02895Not AvailablePositive618648 - 622631147037.0
dna-directed rna polymerase subunit beta'NS355_02900Not AvailablePositive622718 - 627004157850.0
hypothetical proteinNS355_02905Not AvailablePositive627274 - 6274566811.79
hypothetical proteinNS355_02915Not AvailablePositive628788 - 63043761329.3
hypothetical proteinNS355_02920Not AvailableNegative630441 - 63150839090.8
50s ribosomal protein l7NS355_02925Not AvailableNegative631718 - 63209212693.3
50s ribosomal protein l10NS355_02930Not AvailableNegative632162 - 63268317923.7
phosphataseNS355_02935Not AvailablePositive633124 - 63560487023.8
hypothetical proteinNS355_02940Not AvailablePositive635700 - 63679138371.4

Displaying genes 561 – 570 of 3466 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.