Sphingomonas yabuuchiae str. NS355

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas yabuuchiae strain NS355 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0 °C. This organism belongs to the genus Sphingomonas, which is characterized by its diverse metabolic capabilities and adaptation to various environments. The Gram-negative nature of S. yabuuchiae suggests a complex cell wall structure, typically associated with an outer membrane containing lipopolysaccharides, which may influence its interactions with the surrounding environment and other microorganisms. The rod shape of S. yabuuchiae enables efficient nutrient uptake and mobility, which may contribute to its ecological versatility. Given its aerobic requirement, this strain likely participates in processes that involve the degradation of organic compounds in oxygen-rich environments. The optimal growth temperature of 29.0 °C suggests that S. yabuuchiae is well-suited for environments that are moderately warm, potentially including soil and aquatic systems where organic matter is abundant. Moreover, the metabolic pathways utilized by Sphingomonas species are often linked to bioremediation processes, particularly in the breakdown of complex pollutants. This trait underscores the potential ecological role of S. yabuuchiae in contributing to environmental health by participating in carbon cycling and the detoxification of contaminated environments, highlighting its importance in microbial ecology and biotechnology applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas yabuuchiae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas yabuuchiae str. NS355

Accession NumberLDTF00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3411 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
16s ribosomal rnaNot AvailableNot Available+25 - 1518Not Available
Ncrna_class:rnase_p_rnaNot AvailableNot Available+359 - 740Not Available
5s ribosomal rnaNot AvailableNot Available+375 - 489Not Available
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthaseNS355_00005Not Available-1 - 84629490.9
hypothetical proteinNS355_00010Not Available-843 - 194938594.7
2-octaprenylphenol hydroxylaseNS355_00015Not Available-1965 - 350056212.3
ubiquinone biosynthesis methyltransferase ubieNS355_00020Not Available-3529 - 426027033.5
formamidopyrimidine-dna glycosylaseNS355_00025Not Available+4340 - 515529968.1
30s ribosomal protein s20NS355_00030Not Available+5243 - 55069508.75
chromosomal replication initiator protein dnaaNS355_00035Not Available+5984 - 751056132.7

Displaying genes 1 – 10 of 3466 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites