Prochlorococcus marinus str. NATL1A

Gram-negativeCocciNon-motile

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Synechococcales

Family

Prochlorococcaceae

Genus

Prochlorococcus

Description

Prochlorococcus, a fairly recently discovered cyanobacterium (1988), is the smallest known free-living photosynthetic prokaryote. Despite its small size it contributes significantly to global nutrient cycling. It is unique among cyanobacteria in using divinyl chlorophyll a and b as the major light-harvesting pigments, and harvests light with chlorophyll-binding antenna proteins (Pcb proteins) instead of the phycobilisomes used by most cyanobacteria. It is found in low- to mid-latitude oceans and seas, thriving in nutrient-poor waters and at greater depths than its close relative Synechococcus (down to 135m for Prochlorococcus, but only 95m for Synechococcus). Prochlorococcus can be differentiated into low-light (LL) and high-light (HL)-adapted ecotypes that have different physiologies and exist at different depths. Comparison of 12 whole genomes suggests the core genome contains about 1250 genes, while the pan-genome will have more than 5800 genes.This LL-adapted strain was isolated from the North Atlantic Ocean at 10m depth in April 1990. Its chlorophyll b/a ratio is 0.97 and it belongs to high chlorophyll b/a clade I. (HAMAP: PROMT)

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilyProchlorococcaceae
GenusProchlorococcus
SpeciesProchlorococcus marinus
StrainNATL1A

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Prochlorococcus marinus str. NATL1A
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourcePhotosynthetic
PathogenicityNo

Genome Summary

Prochlorococcus marinus str. NATL1A

Accession NumberNC_008819.1

Gene Summary

Adenine Count

606488 bp

Thymine Count

605973 bp

Guanine Count

327266 bp

Cytosine Count

325004 bp

Genome Length

1864731 bp

Protein-coding Genes

2088 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dna polymerase iii subunit betaNATL1_RS00015P52023+188 - 134842055.9
prc-barrel domain-containing proteinNATL1_RS00020Not Available+1351 - 212129445.5
phosphoribosylformylglycinamidine synthase subunit purlNATL1_RS00025A2BZA6+2199 - 453584762.8
amidophosphoribosyltransferaseNATL1_RS00030Q9L6B8+4597 - 605454532.2
dna topoisomerase (atp-hydrolyzing) subunit aNATL1_RS00035P73077-6051 - 853493444.2
tetratricopeptide repeat proteinNATL1_RS00040Not Available-8656 - 948331349.3
trna epoxyqueuosine(34) reductase quegNATL1_RS00045Q46I55-9489 - 1042735853.2
duf502 domain-containing proteinNATL1_RS00050Not Available+10617 - 1134226411.2
transcription antitermination factor nusbNATL1_RS00055B7K4P4+11360 - 1198623890.2
signal recognition particle-docking protein ftsyNATL1_RS00060P73930+12025 - 1327845633.4

Displaying genes 1 – 10 of 2130 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

157 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da

Displaying 1–10 of 157 metabolites