Pseudomonas lini

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas lini
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas lini
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas lini strain DSM 16768 chromosome I.

Gene Summary

Adenine Count

1346483 bp

Thymine Count

1344826 bp

Guanine Count

1922059 bp

Cytosine Count

1916368 bp

Genome Length

6529836 bp

Protein-coding Genes

5753 genes

Non-Coding Genes

177 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyridoxal-phosphate dependent enzymeBLU65_RS20605Not AvailableNegative4539048 - 454042449590.4
uvrd-helicase domain-containing proteinBLU65_RS20610Not AvailableNegative4540591 - 454306592844.8
pirin family proteinBLU65_RS20615Not AvailablePositive4543346 - 454404125268.6
phosphoglucomutase (alpha-d-glucose-1,6-bisphosphate-dependent)BLU65_RS20620Not AvailableNegative4544224 - 454587058950.6
plp-dependent aminotransferase family proteinBLU65_RS20625Not AvailableNegative4545980 - 454738052570.8
hypothetical proteinBLU65_RS20630Not AvailableNegative4547448 - 454893855290.9
zinc-dependent alcohol dehydrogenase family proteinBLU65_RS20635Not AvailableNegative4549502 - 455052437057.7
lysr family transcriptional regulatorBLU65_RS20640Not AvailablePositive4550793 - 455170733371.4
is66 family transposaseBLU65_RS20645Not AvailablePositive4551849 - 455262328746.1
hypothetical proteinBLU65_RS29960Not AvailableNegative4552540 - 455364341332.1

Displaying genes 4131 – 4140 of 5930 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

10 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003208L-2-acetamido-6-oxoheptanedioateC9H11NO6Chemical structure of L-2-acetamido-6-oxoheptanedioateNot available
Average229.189Da
Monoisotopic229.059734238Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0003631(1R,6R)-6-hydroxy-2-succinyl-cyclohexa-2,4-diene-1-carboxylateC11H10O6Chemical structure of (1R,6R)-6-hydroxy-2-succinyl-cyclohexa-2,4-diene-1-carboxylateNot available
Average238.196Da
Monoisotopic238.0488352Da
BASm0003696N-acetyl-(2S,6S)-2,6-diaminoheptanedioateC9H15N2O5Chemical structure of N-acetyl-(2S,6S)-2,6-diaminoheptanedioateNot available
Average231.229Da
Monoisotopic231.098645171Da
BASm00037365-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylateC14H13O9Chemical structure of 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1-carboxylateNot available
Average325.251Da
Monoisotopic325.057602738Da
BASm00037841,4-dihydroxy-2-naphthoyl-CoAC32H38N7O19P3SChemical structure of 1,4-dihydroxy-2-naphthoyl-CoANot available
Average949.67Da
Monoisotopic949.117798519Da
BASm0006855(R)-lipoateC8H14O2S2Chemical structure of (R)-lipoate1200-22-2
Average206.326Da
Monoisotopic206.0435211Da
BASm0007001UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamateC28H39N5O23P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamateNot available
Average875.582Da
Monoisotopic875.1533009Da
BASm0007002UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-L-lysineC34H52N7O24P2Chemical structure of UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-L-lysineNot available
Average1004.764Da
Monoisotopic1004.25554Da

Displaying 1–10 of 10 metabolites

Health Effects

No health effects information available for this bacterium.