Xylella fastidiosa 9a5c

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xylella

Description

Xylella fastidiosa is a gram negative, fastidious, xylem-limited bacterium that causes a range of economically important plant diseases including citrus variegated chlorosis disease (CVC) of oranges and other citrus fruits.X. fastidiosa is also know to cause Pierces disease, a lethal disease to grapevines.The bacterium is spread by certain kinds of leafhoppers known as sharpshooters. While snacking, these insects carry the bacterial infection from plant to plant, transferring X. fastidiosa directly into the plant's xylem, the vascular tissues. There, the bacteria multiply, clogging the plant's internal plumbing and blocking the flow of water to leaves. Trees and plants weaken, leaves discolour, and fruits appear prematurely, remaining small, hard and worthless. Other strains cause leaf scorching of woody perennials such as American elm, maple, mulberry, or plum.The genome sequence reveals the presence of homologues of virulence factors in animal pathogens. Also, genes involved in ion-sequestration and the production of toxins and antibiotics were detected. Such genes may have been acquired by X. fastidiosa (via horizontal gene transfer) to respond to plant defence mechanisms or pesticidal control.Xylella fastidiosa was the first plant pathogen and the first plant associated bacterium to have been sequenced.(From http://www.ebi.ac.uk/2can/genomes/bacteria.html) (BacMap)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXylella
SpeciesXylella fastidiosa
Strain9a5c

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Xylella fastidiosa 9a5c
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature26
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Xylella fastidiosa 9a5c

Accession NumberNC_002488.3

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2152 genes

Non-Coding Genes

321 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hemagglutinin repeat-containing proteinXF_RS13905Not Available-2661512 - 2671879360971.0
hypothetical proteinXF_RS14275Not Available-2672509 - 26726675526.59
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeXF_RS12105Not Available-2672723 - 267407849093.0
polysaccharide deacetylase family proteinXF_RS12110Not Available-2674075 - 2676786101115.0
membrane protein insertase yidcXF_RS12115Not Available-2676877 - 267857464144.3
ribonuclease p protein componentXF_RS12120Not Available-2678619 - 267904716231.2
50s ribosomal protein l34XF_RS12125Not Available-2679085 - 26792255399.68

Displaying genes 2531 – 2537 of 2537 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

97 records
Metabolite IDMetabolite nameStructureCAS number
BASm0002826(2R)-3-phospho-glyceroyl phosphateC3H4O10P2Chemical structure of (2R)-3-phospho-glyceroyl phosphateNot available
Average262.005Da
Monoisotopic261.9301646Da
BASm0002833FMNH2C17H21N4O9PChemical structure of FMNH25666-16-0
Average456.3438Da
Monoisotopic456.1046148Da
BASm0002858all-trans-undecaprenyl phosphateC55H89O4PChemical structure of all-trans-undecaprenyl phosphateNot available
Average845.288Da
Monoisotopic844.6509455Da
BASm0002906all-trans-octaprenyl diphosphateC40H65O7P2Chemical structure of all-trans-octaprenyl diphosphateNot available
Average719.8874Da
Monoisotopic719.4205525Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm00029834-CDP-2-C-methyl-D-erythritolC14H23N3O14P2Chemical structure of 4-CDP-2-C-methyl-D-erythritolNot available
Average519.294Da
Monoisotopic519.0666236Da
BASm00030584-CDP-2-C-methyl-D-erythritol 2-phosphateC14H22N3O17P3Chemical structure of 4-CDP-2-C-methyl-D-erythritol 2-phosphateNot available
Average597.257Da
Monoisotopic597.0184016Da
BASm0003070D-methionineC5H11NO2SChemical structure of D-methionine348-67-4
Average149.211Da
Monoisotopic149.0510493Da
BASm00030862-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphateC34H64NO12PChemical structure of 2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphateNot available
Average709.8452Da
Monoisotopic709.416613029Da
BASm0003116all-trans-undecaprenyl diphosphateC55H89O7P2Chemical structure of all-trans-undecaprenyl diphosphateNot available
Average924.259Da
Monoisotopic923.6099999Da

Displaying 21–30 of 97 metabolites