Pseudomonas cremoricolorata str. ND07

RodMotileaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas cremoricolorata
StrainND07

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas cremoricolorata str. ND07
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature30
Temperature rangeNot Available
HabitatJapanese unhulled rice; rice paddy samples
Biotic relationshipFree-living
Host(s)Oryza sativa
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNon-pathogenic

Genome Summary

Pseudomonas cremoricolorata strain ND07 chromosome, complete

Gene Summary

Adenine Count

880695 bp

Thymine Count

876451 bp

Guanine Count

1511355 bp

Cytosine Count

1511902 bp

Genome Length

4780403 bp

Protein-coding Genes

4105 genes

Non-Coding Genes

271 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
HolinLK03_RS13170Not AvailablePositive2955124 - 295545011717.5
Hypothetical proteinLK03_RS13175Not AvailablePositive2955447 - 295575511439.3
hypothetical proteinLK03_RS13180Not AvailablePositive2955819 - 29560197521.73
Hypothetical proteinLK03_RS21955Not AvailablePositive2956010 - 295639014146.7
Gp1, phage terminase, small subunit, p27 familyLK03_RS13190Not AvailablePositive2956538 - 295702017212.9
Gp2, phage terminase, large subunit, putativeLK03_RS13195Not AvailablePositive2957017 - 295873864470.7
Portal proteinLK03_RS13200Not AvailablePositive2958738 - 296000946649.8
Head maturation proteaseLK03_RS13205Not AvailablePositive2960028 - 296068723312.6
Major capsid proteinLK03_RS13210Not AvailablePositive2960703 - 296186642053.8
hypothetical proteinLK03_RS13215Not AvailablePositive2961908 - 29620936905.02

Displaying genes 31 – 40 of 4376 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

9 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm00015513D-3,5/4-trihydroxycyclohexane-1,2-dioneC6H8O5Chemical structure of 3D-3,5/4-trihydroxycyclohexane-1,2-dioneNot available
Average160.125Da
Monoisotopic160.0371734Da
BASm0002396scyllo-inosineC6H10O6Chemical structure of scyllo-inosineNot available
Average178.14Da
Monoisotopic178.047738042Da
BASm0002665prostaglandin F2alphaC20H33O5Chemical structure of prostaglandin F2alpha0551-11-1
Average353.48Da
Monoisotopic353.2333477Da
BASm0002666prostaglandin H2C20H31O5Chemical structure of prostaglandin H242935-17-1
Average351.464Da
Monoisotopic351.2176977Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00037505-deoxy-D-glucuronateC6H9O6Chemical structure of 5-deoxy-D-glucuronateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm0004229CoA-disulfideC42H62N14O32P6S2Chemical structure of CoA-disulfideNot available
Average1524.99Da
Monoisotopic1524.156559Da

Displaying 1–9 of 9 metabolites

Health Effects

No health effects information available for this bacterium.