Pseudomonas parafulva str. NS212

Motileaerobic

Pseudomonadati

Pseudomonadota

Gammaproteobacteria

Pseudomonadales

Pseudomonadaceae

Pseudomonas

Description

Image source: Wikipedia/Wikimedia

Ecology, Host, and Life Cycle
Oxygen requirements	aerobic
Optimal temperature	30
Temperature range	Not Available
Habitat	Japanese unhulled rice; rice paddy samples
Biotic relationship	Not Available
Host(s)	Oryza sativa
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Not Available
Pathogenicity	Non-pathogenic

Pseudomonas parafulva strain NS212 contig_147, whole genome

Adenine Count

919878 bp

Thymine Count

922620 bp

Guanine Count

1494220 bp

Cytosine Count

1486813 bp

Genome Length

4823531 bp

Protein-coding Genes

4207 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
bifunctional glyoxylate/hydroxypyruvate reductase b	NS212_14250	Not Available	Negative	3120148 - 3121110	34094.4
mfs transporter	NS212_14255	Not Available	Negative	3121107 - 3122411	48088.4
2-dehydro-3-deoxygluconokinase	NS212_14260	Not Available	Negative	3122455 - 3123420	34467.9
ap endonuclease	NS212_14265	Not Available	Negative	3123413 - 3124201	28587.3
transcriptional regulator	NS212_14270	Not Available	Negative	3124276 - 3125295	36821.5
alcohol dehydrogenase	NS212_14275	Not Available	Negative	3125472 - 3126773	47046.6
gmc family oxidoreductase	NS212_14280	Not Available	Negative	3126786 - 3128570	65212.4
gluconate 2-dehydrogenase	NS212_14285	Not Available	Negative	3128574 - 3129317	26957.0
alpha-ketoglutarate-dependent dioxygenase	NS212_14290	Not Available	Positive	3129489 - 3130136	23615.8
hypothetical protein	NS212_14295	Not Available	Positive	3130279 - 3130566	10469.8

Displaying genes 2761 – 2770 of 4207 in total

0 pathways

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000908	propanoateC3H5O2	Not available	Average73.072Da Monoisotopic73.029502981Da
BASm0001279	(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6	Not available	Average457.4399Da Monoisotopic457.1709815Da
BASm0001717	fumarateC4H2O4	Not available	Average114.0563Da Monoisotopic113.9953086Da
BASm0001865	diphosphateHO7P2	Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0002026	acrylateC3H3O2	`10344-93-1`	Average71.056Da Monoisotopic71.013852917Da
BASm0002963	meso-2,6-diaminoheptanedioateC7H14N2O4	`922-54-3`	Average190.1971Da Monoisotopic190.0953569Da
BASm0003276	S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6S	`15912-98-8`	Average267.299Da Monoisotopic267.077658Da
BASm0003351	4-methyl-5-(2-phosphooxyethyl)-thiazoleC6H8NO4PS	Not available	Average221.17Da Monoisotopic220.9922631Da
BASm0003389	NADP(+)C21H25N7O17P3	Not available	Average740.386Da Monoisotopic740.053624107Da