Pseudomonas parafulva str. NS212

Motileaerobic

Pseudomonadati

Pseudomonadota

Gammaproteobacteria

Pseudomonadales

Pseudomonadaceae

Pseudomonas

Description

Image source: Wikipedia/Wikimedia

Ecology, Host, and Life Cycle
Oxygen requirements	aerobic
Optimal temperature	30
Temperature range	Not Available
Habitat	Japanese unhulled rice; rice paddy samples
Biotic relationship	Not Available
Host(s)	Oryza sativa
Cell arrangement	Not Available
Sporulation	Nonsporulating
Energy source	Not Available
Pathogenicity	Non-pathogenic

Pseudomonas parafulva strain NS212 contig_147, whole genome

Adenine Count

919878 bp

Thymine Count

922620 bp

Guanine Count

1494220 bp

Cytosine Count

1486813 bp

Genome Length

4823531 bp

Protein-coding Genes

4207 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

Name	Locus Tag	UniProt ID	Strand Orientation	Gene Start/End	Protein Molecular Weight
iron-hydroxamate abc transporter substrate-binding protein	NS212_08120	Not Available	Positive	1717582 - 1718400	29693.3
tonb-dependent receptor	NS212_08125	Not Available	Negative	1718372 - 1720243	68902.7
1-deoxy-d-xylulose-5-phosphate synthase	NS212_08130	Not Available	Negative	1720420 - 1722315	68234.4
geranyl transferase	NS212_08135	Not Available	Negative	1722434 - 1723321	31399.7
exodeoxyribonuclease vii small subunit	NS212_08140	Not Available	Negative	1723318 - 1723560	8774.28
3,4-dihydroxy-2-butanone 4-phosphate synthase	NS212_08145	Not Available	Negative	1723686 - 1724336	23083.7
esterase	NS212_08150	Not Available	Negative	1724617 - 1725537	32944.4
histidine kinase	NS212_08155	Not Available	Negative	1725618 - 1726964	50328.9
hypothetical protein	NS212_08160	Not Available	Negative	1726964 - 1727656	25483.9
tonb-dependent receptor	NS212_08165	Not Available	Positive	1727839 - 1730013	79074.4

Displaying genes 1571 – 1580 of 4207 in total

0 pathways

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	CAS number	Average mass Monoisotopic mass
BASm0000387	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6	Not available	Average455.432Da Monoisotopic455.1564286Da
BASm0000908	propanoateC3H5O2	Not available	Average73.072Da Monoisotopic73.029502981Da
BASm0001279	(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6	Not available	Average457.4399Da Monoisotopic457.1709815Da
BASm0001717	fumarateC4H2O4	Not available	Average114.0563Da Monoisotopic113.9953086Da
BASm0001865	diphosphateHO7P2	Not available	Average174.95Da Monoisotopic174.9213971Da
BASm0002026	acrylateC3H3O2	`10344-93-1`	Average71.056Da Monoisotopic71.013852917Da
BASm0002963	meso-2,6-diaminoheptanedioateC7H14N2O4	`922-54-3`	Average190.1971Da Monoisotopic190.0953569Da
BASm0003276	S-(5-deoxy-D-ribos-5-yl)-L-homocysteineC9H17NO6S	`15912-98-8`	Average267.299Da Monoisotopic267.077658Da
BASm0003351	4-methyl-5-(2-phosphooxyethyl)-thiazoleC6H8NO4PS	Not available	Average221.17Da Monoisotopic220.9922631Da
BASm0003389	NADP(+)C21H25N7O17P3	Not available	Average740.386Da Monoisotopic740.053624107Da