Paracoccus yeei str. TT13

Gram-negativeCocciNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paracoccus

Description

Paracoccus yeei strain TT13 is a Gram-negative, nonsporulating coccus that functions as a chemoheterotroph, deriving its energy from organic compounds. This microbe is predominantly found in soil environments, where it plays a role in the decomposition of organic matter and nutrient cycling. As an aerobe, P. yeei strain TT13 requires oxygen for its metabolic processes, which is typical of many soil-dwelling bacteria that contribute to aerobic degradation pathways. The spherical morphology of this strain may influence its interactions within soil microbiomes, potentially affecting its ability to colonize specific niches or compete for resources. The nonsporulating characteristic suggests that P. yeei strain TT13 may rely on other survival strategies to withstand unfavorable conditions in its habitat, such as forming biofilms or engaging in cooperative interactions with other microbial species. Understanding the traits of Paracoccus yeei strain TT13 not only highlights its role in soil ecosystems but also emphasizes the importance of aerobic chemoheterotrophs in maintaining soil health and fertility. The microbe's adaptations to its environment could provide insights into the resilience and functionality of microbial communities in response to environmental changes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParacoccus
SpeciesParacoccus yeei
StrainTT13

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Paracoccus yeei str. TT13
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Paracoccus yeei strain TT13 plasmid pTT13-6, complete sequence.

Gene Summary

Adenine Count

4401 bp

Thymine Count

4485 bp

Guanine Count

7864 bp

Cytosine Count

7817 bp

Genome Length

24567 bp

Protein-coding Genes

29 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
heavy-metal-associated domain-containing proteinPYTT13_RS22545Not AvailablePositive6722 - 69226824.17
copper-transporting p-type atpasePYTT13_RS22550Not AvailablePositive7055 - 939481491.0
four-helix bundle copper-binding proteinPYTT13_RS22555Not AvailablePositive9492 - 982411951.6
l,d-transpeptidasePYTT13_RS22560Not AvailableNegative9918 - 1063125753.1
hypothetical proteinPYTT13_RS23055Not AvailablePositive11215 - 1184422269.8
duf305 domain-containing proteinPYTT13_RS22565Not AvailablePositive11985 - 1351751927.4
duf305 domain-containing proteinPYTT13_RS22570Not AvailableNegative13621 - 1416319806.4
hypothetical proteinPYTT13_RS23680Not AvailableNegative14189 - 1488125434.8
tniq family proteinPYTT13_RS23685Not AvailableNegative14934 - 1546119368.0
tnib family ntp-binding proteinPYTT13_RS22580Not AvailableNegative15458 - 1636633736.3

Displaying genes 11 – 20 of 4589 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

318 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da

Displaying 1–10 of 318 metabolites

Health Effects

No health effects information available for this bacterium.