Paracoccus yeei

Gram-negativeCocciNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paracoccus

Description

Paracoccus yeei is a gram-negative, rod-shaped bacterium that thrives optimally at mesophilic temperatures (20–45°C). It is classified as a chemoheterotroph, deriving energy from organic compounds while also requiring organic substrates for growth. This microbe is primarily found in various environmental niches, including soil, water, and plant rhizospheres, where it plays a crucial role in nutrient cycling and organic matter decomposition. P. yeei is known to be a facultative anaerobe, capable of surviving in both aerobic and anaerobic conditions, which allows it to adapt to diverse habitats. The gram-negative nature of P. yeei indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides. This structural characteristic contributes to its resistance to certain antibiotics, making it an important subject of study in microbial resistance. Its rod shape, typical of many soil bacteria, enables efficient movement in various substrates, helping it to colonize and thrive in different environments. As a chemoheterotroph, P. yeei is involved in the degradation of complex organic matter, thus aiding in the recycling of nutrients necessary for plant growth. Its facultative anaerobic metabolism allows it to switch between aerobic respiration and fermentation, making it versatile in fluctuating oxygen conditions. P. yeei has garnered attention for its potential applications in bioremediation due to its ability to degrade environmental pollutants and its role in biogeochemical cycles. Research into its metabolic pathways might reveal novel enzymes that could be utilized in biotechnological processes, emphasizing its significance beyond environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParacoccus
SpeciesParacoccus yeei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Paracoccus yeei
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Paracoccus yeei strain FDAARGOS_252 chromosome, complete genome.

Gene Summary

Adenine Count

592906 bp

Thymine Count

595961 bp

Guanine Count

1216264 bp

Cytosine Count

1216996 bp

Genome Length

3622127 bp

Protein-coding Genes

3491 genes

Non-Coding Genes

158 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aldose epimerase family proteinA6J80_RS10145Not AvailableNegative1559715 - 156072535853.9
smp-30/gluconolactonase/lre family proteinA6J80_RS10150Not AvailableNegative1560722 - 156156730792.1
2-dehydro-3-deoxy-6-phosphogalactonate aldolaseA6J80_RS10155Not AvailableNegative1561564 - 156216620665.1
2-dehydro-3-deoxygalactonokinaseA6J80_RS10160Not AvailableNegative1562163 - 156306231304.8
gfo/idh/moca family proteinA6J80_RS10165Not AvailableNegative1563056 - 156398834037.8
l-arabinonate dehydrataseA6J80_RS10170Not AvailableNegative1563975 - 156572063070.7
multiple monosaccharide abc transporter permeaseA6J80_RS10175Not AvailableNegative1565717 - 156690442040.1
multiple monosaccharide abc transporter atp-binding proteinA6J80_RS10180Not AvailableNegative1566897 - 156847157195.5
multiple monosaccharide abc transporter substrate-binding proteinA6J80_RS10185Not AvailableNegative1568530 - 156959438377.6
lysr family transcriptional regulatorA6J80_RS10190Not AvailablePositive1569833 - 157078634062.7

Displaying genes 1651 – 1660 of 3834 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.