Paracoccus yeei

Gram-negativeCocciNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Paracoccus

Description

Paracoccus yeei is a gram-negative, rod-shaped bacterium that thrives optimally at mesophilic temperatures (20–45°C). It is classified as a chemoheterotroph, deriving energy from organic compounds while also requiring organic substrates for growth. This microbe is primarily found in various environmental niches, including soil, water, and plant rhizospheres, where it plays a crucial role in nutrient cycling and organic matter decomposition. P. yeei is known to be a facultative anaerobe, capable of surviving in both aerobic and anaerobic conditions, which allows it to adapt to diverse habitats. The gram-negative nature of P. yeei indicates that it possesses a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides. This structural characteristic contributes to its resistance to certain antibiotics, making it an important subject of study in microbial resistance. Its rod shape, typical of many soil bacteria, enables efficient movement in various substrates, helping it to colonize and thrive in different environments. As a chemoheterotroph, P. yeei is involved in the degradation of complex organic matter, thus aiding in the recycling of nutrients necessary for plant growth. Its facultative anaerobic metabolism allows it to switch between aerobic respiration and fermentation, making it versatile in fluctuating oxygen conditions. P. yeei has garnered attention for its potential applications in bioremediation due to its ability to degrade environmental pollutants and its role in biogeochemical cycles. Research into its metabolic pathways might reveal novel enzymes that could be utilized in biotechnological processes, emphasizing its significance beyond environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusParacoccus
SpeciesParacoccus yeei
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Paracoccus yeei
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Paracoccus yeei strain FDAARGOS_252 chromosome, complete genome.

Gene Summary

Adenine Count

592906 bp

Thymine Count

595961 bp

Guanine Count

1216264 bp

Cytosine Count

1216996 bp

Genome Length

3622127 bp

Protein-coding Genes

3491 genes

Non-Coding Genes

158 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1-deoxy-d-xylulose-5-phosphate synthaseA6J80_RS08310Not AvailableNegative1192172 - 119409768001.9
polyprenyl synthetase family proteinA6J80_RS08315Not AvailableNegative1194122 - 119498530402.3
exodeoxyribonuclease vii small subunitA6J80_RS08320Not AvailableNegative1194985 - 11952218356.88
histone deacetylase family proteinA6J80_RS08325Not AvailableNegative1195218 - 119613532493.7
trna (n(6)-l-threonylcarbamoyladenosine(37)-c(2))- methylthiotransferase mtabA6J80_RS08330Not AvailableNegative1196282 - 119753545607.3
diaminopimelate epimeraseA6J80_RS08335Not AvailableNegative1197541 - 119835628843.5
Trna-lysNot AvailableNot AvailablePositive1198454 - 1198529Not Available
carbonic anhydraseA6J80_RS08345Not AvailableNegative1198717 - 119936723814.2
hypothetical proteinA6J80_RS08350Not AvailablePositive1199508 - 119988513103.7
leucyl aminopeptidase family proteinA6J80_RS08355Not AvailablePositive1200012 - 120141548519.3

Displaying genes 1271 – 1280 of 3834 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.