Weissella cibaria

Gram-negativeFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Lactobacillales

Family

Lactobacillaceae

Genus

Weissella

Description

Weissella cibaria is a Gram-positive, coccoid-shaped bacterium that thrives in mesophilic temperature ranges, is classified as a heterotroph, and functions primarily as a facultative anaerobe. This microbe is commonly found in various environments, particularly in fermented foods, human oral cavities, and the gastrointestinal tracts of humans and animals. As a Gram-positive organism, Weissella cibaria retains the crystal violet stain during the Gram staining process due to its thick peptidoglycan layer, which provides structural integrity and protection against environmental stressors. The coccoid morphology contributes to its ability to form biofilms, which is significant for colonization and interaction with other microbial species. The mesophilic temperature preference indicates that it grows optimally at moderate temperatures, typically between 30°C to 37°C, aligning with the conditions found in the human body and various food fermentation processes. As a heterotroph, Weissella cibaria derives its energy from organic compounds, which it ferments to produce lactic acid, making it an important player in food fermentation and preservation. Being a facultative anaerobe, it can grow in both the presence and absence of oxygen, allowing it to thrive in diverse environments, whether in aerobic conditions such as the oral cavity or anaerobic conditions found in the gut. Weissella cibaria has garnered attention in studies related to oral health and may play a role in preventing dental caries due to its ability to produce lactic acid while inhibiting pathogenic bacteria. Additionally, its presence in fermented foods not only contributes to flavor and texture but also enhances the nutritional profile of such products by introducing beneficial probiotics, underscoring its significance in both human health and culinary practices.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyLactobacillaceae
GenusWeissella
SpeciesWeissella cibaria
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatChili Bo; Korean kimchi; pasture; saliva; soil; tropical fruits
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Weissella cibaria

Accession NumberNZ_CP020929.1

Gene Summary

Adenine Count

7966 bp

Thymine Count

9771 bp

Guanine Count

6182 bp

Cytosine Count

7528 bp

Genome Length

31447 bp

Protein-coding Genes

22 genes

Non-Coding Genes

15 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Putative tail endopeptidaseB6254_RS12205Not Available-13789 - 16770107903.0
Tail proteinB6254_RS12210Not Available-16767 - 1749226593.5
Minor tail proteinB6254_RS12215Not Available-17511 - 21581147488.0
hypothetical proteinB6254_RS12605Not Available-21596 - 217365449.27
Putative tail componentB6254_RS12220Not Available-21805 - 2216413292.0
Major tail proteinB6254_RS12225Not Available-22294 - 2290221296.9
Head-tail joining proteinB6254_RS12230Not Available-22938 - 2332414829.4
Putative tail component proteinB6254_RS12235Not Available-23324 - 2380017572.6
Capsid-tail joining proteinB6254_RS12240Not Available-23803 - 2413812622.0
Orf44B6254_RS12245Not Available-24138 - 2443110214.2

Displaying genes 1 – 10 of 2396 in total

Pathways

22 pathways

Metabolites

247 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001360methanesulfonateCH3O3SChemical structure of methanesulfonate59721-29-8
Average95.09Da
Monoisotopic94.980838711Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 247 metabolites