Streptomyces rimosus subsp. rimosus

Gram-positive

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Kitasatosporales

Family

Streptomycetaceae

Genus

Streptomyces

Description

Streptomyces rimosus subsp. rimosus is a Gram-positive bacterium belonging to the genus Streptomyces, which is well-known for its role in natural antibiotic production. This subspecies is primarily found in soil environments, contributing to the complex microbial communities that inhabit terrestrial ecosystems. As a member of the Actinobacteria phylum, S. rimosus subsp. rimosus exhibits filamentous growth, forming a characteristic mycelium that is typical of its genus. The ability of S. rimosus subsp. rimosus to thrive in soil habitats suggests that it plays a significant role in nutrient cycling and soil health. This organism is particularly noted for its production of the antibiotic streptomycin, which has been pivotal in the treatment of bacterial infections, particularly those caused by Mycobacterium tuberculosis. The ecological interactions of S. rimosus subsp. rimosus with other soil microorganisms could influence the dynamics of microbial populations and the overall functionality of soil ecosystems. Given its ecological niche, S. rimosus subsp. rimosus illustrates the importance of soil-dwelling microbes in biotechnological applications, particularly in the development of pharmaceuticals derived from natural products. Its presence in soil not only underscores the diversity of microbial life but also highlights the potential for discovering novel bioactive compounds that can address medical challenges.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderKitasatosporales
FamilyStreptomycetaceae
GenusStreptomyces
SpeciesStreptomyces rimosus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Streptomyces rimosus subsp. rimosus

Accession NumberLGCQ00000000.1

Gene Summary

Adenine Count

1328562 bp

Thymine Count

1336150 bp

Guanine Count

3413344 bp

Cytosine Count

3407039 bp

Genome Length

9485098 bp

Protein-coding Genes

7340 genes

Non-Coding Genes

85 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
hypothetical proteinADK43_00005Not Available+1 - 186467881.5
16s ribosomal rnaNot AvailableNot Available+6 - 1538Not Available
5s ribosomal rnaNot AvailableNot Available+271 - 387Not Available
phospho-2-dehydro-3-deoxyheptonate aldolaseADK43_00010P0AB92+2014 - 309037119.2
hypothetical proteinADK43_00025Not Available+5982 - 715141004.7
hypothetical proteinADK43_00030Not Available+7253 - 775017137.6
transcriptional regulatorADK43_00035O31834+7750 - 79747928.57
Ncrna_class:otherNot AvailableNot Available+9379 - 9453Not Available
hypothetical proteinADK43_00045Not Available+10190 - 1164752558.2
hypothetical proteinADK43_00050Not Available-11660 - 1227722215.0

Displaying genes 1 – 10 of 7425 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

486 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000198tetracenomycin CC23H20O11Chemical structure of tetracenomycin CNot available
Average472.402Da
Monoisotopic472.100561464Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 486 metabolites