Xanthomonas oryzae pv. oryzicola str. CFBP7342

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas oryzae pv. oryzicola str. CFBP7342 is a Gram-negative, rod-shaped bacterium that is classified within the Xanthomonadaceae family. This microbe is primarily associated with host organisms, indicating its specialization to thrive in environments closely linked to its biological hosts. It exhibits an aerobic metabolism, necessitating oxygen for its growth and survival, which is characteristic of many bacteria within its genus. The rod shape of X. oryzae pv. oryzicola str. CFBP7342 may play a role in its motility and colonization abilities, potentially facilitating its interactions with plant tissues. The association with host organisms suggests that this bacterium may have evolved specific mechanisms to adapt to the plant environment, which could include the secretion of virulence factors or the establishment of symbiotic relationships. The ecological significance of Xanthomonas oryzae pv. oryzicola str. CFBP7342 lies in its potential role in influencing plant health and agriculture, as its habitat is intimately linked to host plants. Understanding the traits of this bacterium could contribute to elucidating its interactions within the plant microbiome and its impact on agricultural systems, particularly in rice cultivation. Further research into its metabolic pathways and host interactions may reveal insights into its ecological niche and potential management strategies in agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas oryzae
Strainpv. oryzicola CFBP7342

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas oryzae pv. oryzicola str. CFBP7342
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Oryza sativa, Arabidopsis thaliana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityPlant

Genome Summary

Xanthomonas oryzae pv. oryzicola strain CFBP7342 chromosome,

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

Not Available

Non-Coding Genes

Not Available

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Hypothetical proteinBE73_RS02160Not AvailableNegative491860 - 49221012806.1
Major tail subunitBE73_RS02165Not AvailableNegative492214 - 49266615477.2
Gp71BE73_RS02170Not AvailableNegative492732 - 49306712152.3
Gp72BE73_RS02175Not AvailableNegative493064 - 49346515208.5
Putative head-tail adaptorBE73_RS02180Not AvailableNegative493458 - 49379011899.4
Hypothetical proteinBE73_RS02185Not AvailableNegative493787 - 49420314660.6
hypothetical proteinBE73_RS02190Not AvailableNegative494207 - 4944317604.68
Major capsid protein gp5BE73_RS02195Not AvailableNegative494491 - 49573544943.0
Capsid maturation proteaseBE73_RS02200Not AvailableNegative495801 - 49652925999.9
Portal protein gp3BE73_RS02205Not AvailableNegative496495 - 49781148344.5

Displaying genes 1 – 10 of 4713 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial leaf streak of riceCausesPMC8042644
Bacterial leaf streak (bls)CausesPMC10265122
Bacterial leaf streakCausesPMC6215013
Bacterial leaf streakCausesPMC8336823

Displaying health effects 1 – 4 of 4 in total