Persephonella marina EX-H1

Gram-negativeRodNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Aquificota

Class

Aquificia

Order

Aquificales

Family

Hydrogenothermaceae

Genus

Persephonella

Description

Persephonella marina (strain DSM 14350 / EX-H1) is a chemolithotrophic, thermophilic hydrogen-oxidizing bacterium isolated from a deep sea hydrothermal vent on the East Pacific Rise. P. marina has one chromosome and one megaplasmid. It is able to fix CO2 using the A-type reductive tricarboxylic acid (TCA) cycle. P. marina possesses genes to catalyze the oxidation of sulfide to elemental sulfur and is an autotrophic nitrate reducer. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumAquificota
ClassAquificia
OrderAquificales
FamilyHydrogenothermaceae
GenusPersephonella
SpeciesPersephonella marina
StrainEX-H1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Persephonella marina EX-H1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature73
Temperature rangeThermophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemolithoautotroph
PathogenicityNo

Genome Summary

Persephonella marina EX-H1 plasmid unnamed, complete sequence.

Gene Summary

Adenine Count

16255 bp

Thymine Count

18987 bp

Guanine Count

8391 bp

Cytosine Count

10049 bp

Genome Length

53682 bp

Protein-coding Genes

68 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinPERMA_RS10090Not AvailablePositive113 - 89229888.3
type iv secretory system conjugative dna transfer family proteinPERMA_RS10095Not AvailablePositive972 - 292474232.1
hypothetical proteinPERMA_RS10800Not AvailablePositive2911 - 30877194.56
ykgj family cysteine cluster proteinPERMA_RS10100Not AvailablePositive3084 - 380328010.9
hypothetical proteinPERMA_RS10105Not AvailableNegative3787 - 436222298.3
hypothetical proteinPERMA_RS10110Not AvailableNegative4349 - 486120108.5
hypothetical proteinPERMA_RS10115Not AvailableNegative5151 - 572022058.1
hypothetical proteinPERMA_RS10120Not AvailableNegative5879 - 60676847.49
hypothetical proteinPERMA_RS10125Not AvailableNegative6064 - 637212028.8
atp-binding proteinPERMA_RS10130Not AvailableNegative6369 - 709427727.1

Displaying genes 1 – 10 of 2096 in total

Metabolites

1643 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 1643 metabolites

Health Effects

No health effects information available for this bacterium.