Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1472813 bp
Thymine Count
1468197 bp
Guanine Count
950399 bp
Cytosine Count
973739 bp
Genome Length
4865148 bp
Protein-coding Genes
3744 genes
Non-Coding Genes
128 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Attl | Not Available | Not Available | Positive | 659336 - 659353 | Not Available |
| Tail spike | UB36_03180 | Not Available | Negative | 661933 - 662664 | 26725.0 |
| Hypothetical protein | UB36_03185 | Not Available | Negative | 662649 - 663338 | 25599.0 |
| Tail-collar fiber protein | UB36_03190 | Not Available | Negative | 663350 - 663952 | 22183.6 |
| Putative tail fiber assembly protein | UB36_03195 | Not Available | Negative | 663975 - 664511 | 20050.4 |
| Putative tail fiber protein | UB36_03200 | Not Available | Negative | 664521 - 665996 | 54113.8 |
| Baseplate j-like protein | UB36_03205 | Not Available | Negative | 666006 - 666608 | 23318.2 |
| Tail tape measure protein | UB36_03215 | Not Available | Negative | 667784 - 668116 | 12412.9 |
| Tail tape measure protein | UB36_03220 | Not Available | Negative | 668113 - 670272 | 76763.8 |
| Tail assembly chaperone | UB36_03225 | Not Available | Negative | 670468 - 670734 | 9726.63 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
