Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1472813 bp
Thymine Count
1468197 bp
Guanine Count
950399 bp
Cytosine Count
973739 bp
Genome Length
4865148 bp
Protein-coding Genes
3744 genes
Non-Coding Genes
128 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphate abc transporter substrate-binding protein | UB36_00070 | Not Available | Negative | 19534 - 20358 | 28842.5 |
| hypothetical protein | UB36_00075 | Not Available | Negative | 20488 - 20910 | 16340.4 |
| caax protease | UB36_00080 | Not Available | Positive | 21080 - 21904 | 30079.0 |
| hypothetical protein | UB36_00085 | Not Available | Negative | 21959 - 23092 | 43052.2 |
| cytochrome c554 | UB36_00090 | Not Available | Negative | 23249 - 23569 | 11784.1 |
| 2-oxoisovalerate dehydrogenase | UB36_00100 | Not Available | Negative | 24897 - 25880 | 35913.8 |
| abc transporter permease | UB36_00105 | Not Available | Negative | 25873 - 26982 | 41232.1 |
| dna ligase | UB36_00110 | Not Available | Negative | 27220 - 28164 | 35931.4 |
| oxidoreductase | UB36_00125 | Not Available | Negative | 29992 - 31461 | 54262.7 |
| membrane protein | UB36_00130 | Not Available | Positive | 32002 - 33069 | 39002.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
