Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1472813 bp
Thymine Count
1468197 bp
Guanine Count
950399 bp
Cytosine Count
973739 bp
Genome Length
4865148 bp
Protein-coding Genes
3744 genes
Non-Coding Genes
128 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine cleavage system protein h | UB36_00010 | Not Available | Negative | 3477 - 3857 | 13506.3 |
| transcriptional regulator | UB36_00015 | Not Available | Positive | 4209 - 4835 | 23723.2 |
| glycine cleavage system protein t | UB36_00020 | Not Available | Positive | 4921 - 6039 | 40570.0 |
| tyrosyl-trna synthetase | UB36_00030 | Not Available | Negative | 7836 - 9110 | 47478.2 |
| tyrosine transporter | UB36_00035 | Not Available | Negative | 9140 - 10363 | 44476.9 |
| decarboxylase | UB36_00040 | Not Available | Negative | 10523 - 12436 | 72174.7 |
| xre family transcriptional regulator | UB36_00050 | Not Available | Positive | 15329 - 15973 | 24833.9 |
| aromatic amino acid aminotransferase | UB36_00055 | Not Available | Positive | 16132 - 17313 | 43057.6 |
| helicase | UB36_00060 | Not Available | Negative | 17376 - 17756 | 13928.0 |
| threonine aldolase | UB36_00065 | Not Available | Negative | 18145 - 19251 | 40502.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
