Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1472813 bp
Thymine Count
1468197 bp
Guanine Count
950399 bp
Cytosine Count
973739 bp
Genome Length
4865148 bp
Protein-coding Genes
3744 genes
Non-Coding Genes
128 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Major capsid protein, p2 family | UB36_03280 | Not Available | Negative | 676228 - 677247 | 36910.5 |
| Gpo family capsid scaffolding protein | UB36_03285 | Not Available | Negative | 677257 - 678135 | 33049.6 |
| Large terminase subunit | UB36_03290 | Not Available | Positive | 678335 - 680116 | 68518.8 |
| Portal vertex protein | UB36_03295 | Not Available | Positive | 680095 - 681126 | 38047.4 |
| hypothetical protein | UB36_03300 | Not Available | Negative | 681378 - 681602 | 8405.06 |
| hypothetical protein | UB36_03305 | Not Available | Positive | 682080 - 682421 | 12517.5 |
| hypothetical protein | UB36_03315 | Not Available | Positive | 683758 - 684945 | 44725.7 |
| Hypothetical protein | UB36_03325 | Not Available | Negative | 687574 - 687801 | 8148.81 |
| hypothetical protein | UB36_03330 | Not Available | Negative | 687798 - 687995 | 7754.39 |
| hypothetical protein | UB36_03340 | Not Available | Negative | 688495 - 688782 | 10687.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
