Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae 111bp-OG15A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1367470 bp
Thymine Count
1358376 bp
Guanine Count
932138 bp
Cytosine Count
927452 bp
Genome Length
4585436 bp
Protein-coding Genes
3981 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2909 domain-containing protein | FD721_04580 | Not Available | Positive | 984340 - 984546 | 7659.02 |
| cytochrome c oxidase subunit 3 | FD721_04585 | Not Available | Negative | 984550 - 985425 | 32670.5 |
| cytochrome c oxidase assembly protein | FD721_04590 | Not Available | Negative | 985435 - 986031 | 21601.9 |
| cytochrome c oxidase subunit i | FD721_04595 | Not Available | Negative | 986041 - 987657 | 59832.3 |
| cytochrome c oxidase subunit ii | FD721_04600 | Not Available | Negative | 987668 - 988813 | 43011.3 |
| class i sam-dependent methyltransferase | FD721_04605 | Not Available | Negative | 989055 - 989852 | 30491.9 |
| repressor lexa | FD721_04610 | Not Available | Negative | 990002 - 990628 | 22879.6 |
| glycerol-3-phosphate 1-o-acyltransferase plsb | FD721_04615 | Not Available | Positive | 990997 - 993447 | 92441.1 |
| 4-hydroxybenzoate octaprenyltransferase | FD721_04620 | Not Available | Negative | 993540 - 994403 | 32087.3 |
| chorismate lyase | FD721_04625 | Not Available | Negative | 994397 - 994939 | 20367.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
