Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae 111bp-OG15A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1367470 bp
Thymine Count
1358376 bp
Guanine Count
932138 bp
Cytosine Count
927452 bp
Genome Length
4585436 bp
Protein-coding Genes
3981 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iv secretion protein rhs | FD721_04175 | Not Available | Positive | 904657 - 905184 | 20139.5 |
| hypothetical protein | FD721_04180 | Not Available | Positive | 905193 - 905582 | 14929.0 |
| hypothetical protein | FD721_04185 | Not Available | Positive | 905852 - 905961 | 4272.02 |
| hypothetical protein | FD721_04190 | Not Available | Positive | 906532 - 906912 | 13775.7 |
| prepilin-type n-terminal cleavage/methylation domain-containing protein | FD721_04195 | Not Available | Positive | 907130 - 907714 | 21359.0 |
| sensor domain-containing diguanylate cyclase | FD721_04200 | Not Available | Positive | 907870 - 909225 | 52398.8 |
| spermidine/putrescine abc transporter substrate-binding protein | FD721_04205 | Not Available | Negative | 909232 - 910263 | 39001.3 |
| fad-binding oxidoreductase | FD721_04210 | Not Available | Positive | 910459 - 911739 | 47665.7 |
| Trna-ser | Not Available | Not Available | Positive | 911878 - 911968 | Not Available |
| dna phosphorothioation-associated putative methyltransferase | FD721_04220 | Not Available | Negative | 912494 - 914518 | 78586.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
