Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae 111bp-OG15A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1367470 bp
Thymine Count
1358376 bp
Guanine Count
932138 bp
Cytosine Count
927452 bp
Genome Length
4585436 bp
Protein-coding Genes
3981 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| urease subunit beta | FD721_03150 | Not Available | Negative | 686645 - 686959 | 11823.5 |
| urease subunit gamma | FD721_03155 | Not Available | Negative | 686969 - 687271 | 11115.7 |
| urease accessory protein ured | FD721_03160 | Not Available | Negative | 687296 - 688144 | 32129.6 |
| abc transporter substrate-binding protein | FD721_03165 | Not Available | Positive | 688665 - 690239 | 58719.7 |
| abc transporter permease | FD721_03170 | Not Available | Positive | 690218 - 691192 | 35826.4 |
| abc transporter permease | FD721_03175 | Not Available | Positive | 691189 - 691986 | 29580.1 |
| atp-binding cassette domain-containing protein | FD721_03180 | Not Available | Positive | 691973 - 692668 | 25522.9 |
| atp-binding cassette domain-containing protein | FD721_03185 | Not Available | Positive | 692661 - 693257 | 22479.3 |
| hexose-6-phosphate:phosphate antiporter | FD721_03190 | Not Available | Negative | 693328 - 694728 | 50667.4 |
| acr3 family arsenite efflux transporter | FD721_03195 | Not Available | Negative | 695041 - 696114 | 39154.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
