Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae 111bp-OG15A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1367470 bp
Thymine Count
1358376 bp
Guanine Count
932138 bp
Cytosine Count
927452 bp
Genome Length
4585436 bp
Protein-coding Genes
3981 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trypsin-like serine protease | FD721_02850 | Not Available | Negative | 618848 - 619873 | 36564.2 |
| lysr family transcriptional regulator | FD721_02855 | Not Available | Negative | 620012 - 620938 | 34709.9 |
| enoyl-coa hydratase/isomerase family protein | FD721_02860 | Not Available | Positive | 621086 - 621901 | 29865.0 |
| reactive intermediate/imine deaminase | FD721_02865 | Not Available | Positive | 622365 - 623630 | 45256.1 |
| ggdef domain-containing protein | FD721_02870 | Not Available | Positive | 624025 - 625677 | 63743.4 |
| glycoside hydrolase family 92 protein | FD721_02875 | Not Available | Positive | 625917 - 628313 | 89001.9 |
| lta synthase family protein | FD721_02880 | Not Available | Negative | 628400 - 630379 | 76208.1 |
| uroporphyrinogen-iii c-methyltransferase | FD721_02885 | Not Available | Negative | 630622 - 631383 | 27627.4 |
| nitrite transporter nirc | FD721_02890 | Not Available | Negative | 631405 - 632223 | 29214.1 |
| nitrite reductase small subunit nird | FD721_02895 | Not Available | Negative | 632337 - 632666 | 12427.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
