Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae 111bp-OG15A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1367470 bp
Thymine Count
1358376 bp
Guanine Count
932138 bp
Cytosine Count
927452 bp
Genome Length
4585436 bp
Protein-coding Genes
3981 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-hydroxy-tetrahydrodipicolinate reductase | FD721_02650 | Not Available | Negative | 576450 - 577256 | 28419.4 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | FD721_02655 | Not Available | Negative | 577332 - 578279 | 34868.5 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | FD721_02660 | Not Available | Negative | 578293 - 578727 | 15524.5 |
| lipoprotein signal peptidase | FD721_02665 | Not Available | Negative | 578836 - 579336 | 18667.9 |
| isoleucine--trna ligase | FD721_02670 | Not Available | Negative | 579336 - 582176 | 105816.0 |
| bifunctional riboflavin kinase/fad synthetase | FD721_02675 | Not Available | Negative | 582182 - 583144 | 35908.6 |
| murein biosynthesis integral membrane protein murj | FD721_02680 | Not Available | Negative | 583226 - 584785 | 56700.3 |
| 30s ribosomal protein s20 | FD721_02685 | Not Available | Positive | 584996 - 585256 | 9677.15 |
| winged helix-turn-helix transcriptional regulator | FD721_02690 | Not Available | Negative | 585347 - 585649 | 11416.0 |
| transcriptional activator nhar | FD721_02695 | Not Available | Negative | 585747 - 586634 | 34110.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
