Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae 111bp-OG15A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1367470 bp
Thymine Count
1358376 bp
Guanine Count
932138 bp
Cytosine Count
927452 bp
Genome Length
4585436 bp
Protein-coding Genes
3981 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system contractile sheath small subunit | FD721_02500 | Not Available | Positive | 541291 - 541788 | 18172.6 |
| type vi secretion system contractile sheath large subunit | FD721_02505 | Not Available | Positive | 541842 - 543320 | 55662.8 |
| type vi secretion system baseplate subunit tsse | FD721_02510 | Not Available | Positive | 543325 - 543762 | 16293.5 |
| type vi secretion system baseplate subunit tssf | FD721_02515 | Not Available | Positive | 543765 - 545531 | 67066.1 |
| type vi secretion system baseplate subunit tssg | FD721_02520 | Not Available | Positive | 545495 - 546502 | 38184.5 |
| type vi secretion system-associated fha domain protein tagh | FD721_02525 | Not Available | Positive | 546515 - 547969 | 54745.6 |
| elongation factor p-like protein yeip | FD721_02530 | Not Available | Positive | 548497 - 549066 | 21108.0 |
| duf440 family protein | FD721_02535 | Not Available | Positive | 549271 - 549597 | 12655.6 |
| multidrug efflux mfs transporter emrd | FD721_02540 | Not Available | Negative | 549715 - 550923 | 42500.0 |
| gtp cyclohydrolase ii | FD721_02545 | Not Available | Negative | 551274 - 551873 | 22250.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
