Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae 111bp-OG15A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1367470 bp
Thymine Count
1358376 bp
Guanine Count
932138 bp
Cytosine Count
927452 bp
Genome Length
4585436 bp
Protein-coding Genes
3981 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pilus assembly protein pilp | FD721_01720 | Not Available | Positive | 343938 - 344489 | 20405.7 |
| type ii secretion protein | FD721_01725 | Not Available | Positive | 344491 - 346050 | 57744.1 |
| hypothetical protein | FD721_01730 | Not Available | Positive | 346047 - 347036 | 35658.0 |
| hypothetical protein | FD721_01735 | Not Available | Positive | 347048 - 347611 | 20162.9 |
| prepilin-type n-terminal cleavage/methylation domain-containing protein | FD721_01740 | Not Available | Positive | 347613 - 348104 | 18176.1 |
| type ii secretion system protein | FD721_01745 | Not Available | Positive | 348101 - 348768 | 24924.1 |
| hypothetical protein | FD721_01750 | Not Available | Negative | 348769 - 350535 | 62522.3 |
| hypothetical protein | FD721_01755 | Not Available | Negative | 350536 - 352259 | 60829.5 |
| site-specific integrase | FD721_01760 | Not Available | Negative | 352260 - 354297 | 76808.3 |
| hypothetical protein | FD721_01765 | Not Available | Negative | 354315 - 356744 | 92554.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
