Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Vibrionales
Family
Vibrionaceae
Genus
Photobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Vibrionales |
| Family | Vibrionaceae |
| Genus | Photobacterium |
| Species | Photobacterium damselae |
| Strain | subsp. damselae 111bp-OG15A |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | mesophilic |
| Habitat | coastal waters; estuaries; Marine; oceans; seaweeds; sediments |
| Biotic relationship | Not Available |
| Host(s) | Homo sapiens, Pancrustacea, Aves |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1367470 bp
Thymine Count
1358376 bp
Guanine Count
932138 bp
Cytosine Count
927452 bp
Genome Length
4585436 bp
Protein-coding Genes
3981 genes
Non-Coding Genes
56 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hcp family type vi secretion system effector | FD721_01470 | Not Available | Positive | 289786 - 290307 | 19228.7 |
| type vi secretion system tip protein vgrg | FD721_01475 | Not Available | Positive | 290416 - 292473 | 76368.3 |
| duf4123 domain-containing protein | FD721_01480 | Not Available | Positive | 292455 - 293279 | 31914.4 |
| hypothetical protein | FD721_01485 | Not Available | Positive | 293279 - 296296 | 114181.0 |
| hypothetical protein | FD721_01490 | Not Available | Negative | 296601 - 297083 | 18388.8 |
| duf4832 domain-containing protein | FD721_01495 | Not Available | Negative | 297207 - 298721 | 58389.7 |
| amp-dependent synthetase | FD721_01500 | Not Available | Negative | 298973 - 300622 | 61895.9 |
| hypothetical protein | FD721_01505 | Not Available | Positive | 300959 - 301642 | 25900.2 |
| tetr/acrr family transcriptional regulator | FD721_01510 | Not Available | Positive | 301857 - 302318 | 17522.0 |
| tolc family protein | FD721_01515 | Not Available | Positive | 302486 - 303925 | 52990.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Haemorrhagic septicemia | Causes | PMC12895208 |
| Skin lesions | Causes | PMC12895208 |
| Necrotizing fasciitis | Causes | PMC12895208 |
| Soft-tissue infection | Causes | PMC8231020 |
| Chronic suppurative pneumonia | Causes | PMC9796189 |
| Splenic lymphoid depletion | Causes | PMC9796189 |
| Wound infections | Causes | PMC9796189 |
| Hemorrhagic septicemia | Causes | PMC9796189 |
| Pneumonia | Causes | PMC9796189 |
